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NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

Willem de Koning, Milad Miladi, Saskia Hiltemann, Astrid Heikema, John P Hays, Stephan Flemming, Marius van den Beek, Dana A Mustafa, Rolf Backofen, Björn Grüning, Andrew P Stubbs

In this paper, de Koning, et al describe “NanoGalaxy", a Galaxy-based toolkit for analysing long-read sequencing data, suitable for diverse applications, including de novo genome assembly from genomic, metagenomic, and plasmid sequence reads.Read the full publication here.

https://doi.org/10.1093/gigascience/giaa105

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Publications, WP5
CINECA Outreach and dissemination plan D6.1

In this deliverable document, we report on the activities in task 6.1 – Stakeholder analysis, with the outreach and dissemination plan, as well as the training plan presented in this report, we have completed this task. We have used a combination of surveys and face-to-face meetings to verify and extend or identify key stakeholder groups, understand their interest in the project, and identify bottlenecks that can be addressed by outreach and training. Outreach activities will be accomplished by task 6.2 and training by task 6.3.

https://doi.org/10.5281/zenodo.7733981

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Deliverables, WP4deliverables, wp4