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Data Harmonization workshop


Date: 18th – 19th May 2022
Time: 14:00-18:00 CEST
Location: Online
Workshop organisers: CINECA, H3ABioNet
Contact: Nicola Mulder, Mamana Mbiyavanga


Workshop programme

Time CEST/CAT

Topic

Speaker

18th  May 2022

14:00

Welcome and introduction, workshop aims - Video, Slides

Nicky Mulder (CINECA , H3Africa/H3ABioNet, University of Cape Town, South Africa)

14:15

Data cleaning - Video

Katherine Johnston, Ayton Meintjes (H3Africa/H3ABioNet, University of Cape Town, South Africa)

14:45

Machine learning/text mining tools for cleaning data - Video

Isuru Liyanage (CINECA, EMBL-EBI, UK)

15:15

ELSI considerations in merging data - Video

Melanie Goisauf (CINECA, BBMRI-ERIC, Austria)

15:40-16:00

Break

16:00

Overview of data collection standards, ontology terminology and interoperability - Video

Peter Robinson (Jackson Laboratory, US)

16:45

Metadata: GECKO, IHCC - Video

Carles Garcia (CINECA, EMBL-EBI, UK)

End 18:00

Hands-on  work to prepare for loading into Atlas - Video

Carles Garcia (CINECA, EMBL-EBI, UK)

19th  May 2022

14:00

Browse newly uploaded data in Atlas - Video

Carles Garcia (CINECA, EMBL-EBI, UK)

14:20

Other considerations -data storage standards - Video

Alexa Heekes (Western Cape Department of Health, University of Cape Town, South Africa)

14:45

Summary from the literature review on data harmonization - Video

Lyndon Zass (H3Africa/H3ABioNet, University of Cape Town, South Africa)

15:00

Example 1: DPUK - Video

Sarah Bauermeister (DPUK, University of Oxford, UK)

15:20

Example 2: H3Africa CVD - Video

Katherine Johnston (H3Africa/H3ABioNet, University of Cape Town, South Africa)

15:45-16:00

Break

16:00

Example 3: PRIMED - Video

Leslie Lange (PRIME consortium, University of Colorado, USA)

16:20

Data harmonization algorithms - Video

Mamana Mbiyavanga (CINECA , H3Africa/H3ABioNet, University of Cape Town, South Africa)

16:45

Cohort representation (MIACC), how to generate and share summary data - Video

Melanie Courtot (OICR, Canada)

17:15-18:00

BYOD and discussion - Video

All